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    si:cabz01007794.1 si:cabz01007794.1 [ Danio rerio (zebrafish) ]

    Gene ID: 100537515, updated on 11-Apr-2024

    Summary

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    Official Symbol
    si:cabz01007794.1provided by ZNC
    Official Full Name
    si:cabz01007794.1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-160728-147
    See related
    Ensembl:ENSDARG00000105590 AllianceGenome:ZFIN:ZDB-GENE-160728-147
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (2021025..2039054, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (2212895..2230924, complement)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene zgc:171424 Neighboring gene uncharacterized LOC110439977 Neighboring gene uncharacterized LOC103911313 Neighboring gene apolipoprotein L domain containing 1b Neighboring gene si:cabz01007807.1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of glutamate receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    mucin-5AC-like; putative GPI-anchored protein pfl2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      2021025..2039054 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009302816.1 → XP_009301091.1  putative GPI-anchored protein pfl2 isoform X8

      UniProtKB/TrEMBL
      A0A8M3BAQ7
      Conserved Domains (1) summary
      cl14783
      Location:349 → 466
      DOMON_like; Domon-like ligand-binding domains

    2. XM_009302815.1 → XP_009301090.1  mucin-5AC-like isoform X7

      UniProtKB/TrEMBL
      A0A8M3ATV4
      Conserved Domains (1) summary
      cl14783
      Location:477 → 594
      DOMON_like; Domon-like ligand-binding domains

    3. XM_017356933.1 → XP_017212422.1  mucin-5AC-like isoform X2

      UniProtKB/TrEMBL
      A0A8M6YZ96

    4. XM_017356935.1 → XP_017212424.1  mucin-5AC-like isoform X6

      UniProtKB/TrEMBL
      A0A8M6Z027

    5. XM_009302813.1 → XP_009301088.1  mucin-5AC-like isoform X4

      See identical proteins and their annotated locations for XP_009301088.1

      UniProtKB/TrEMBL
      A0A8M3B3T3
      Conserved Domains (1) summary
      cl14783
      Location:565 → 682
      DOMON_like; Domon-like ligand-binding domains

    6. XM_009302812.1 → XP_009301087.1  mucin-5AC-like isoform X3

      See identical proteins and their annotated locations for XP_009301087.1

      UniProtKB/TrEMBL
      A0A8M3B3T3
      Conserved Domains (1) summary
      cl14783
      Location:565 → 682
      DOMON_like; Domon-like ligand-binding domains

    7. XM_017356934.1 → XP_017212423.1  mucin-5AC-like isoform X5

      UniProtKB/TrEMBL
      A0A8M6Z778

    8. XM_009302811.1 → XP_009301086.1  mucin-5AC-like isoform X1

      UniProtKB/TrEMBL
      A0A8M3ATT1
      Related
      ENSDARP00000142818.1, ENSDART00000173879.2
      Conserved Domains (1) summary
      cl14783
      Location:577 → 694
      DOMON_like; Domon-like ligand-binding domains
    Nucleotide Protein Strain
    Heading Accession and Version

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